Bruker DataAnalysis Automation Scripts

This section contains scripts designed to streamline and automate common data-processing tasks in Bruker DataAnalysis, with a focus on reproducibility and easy data export.

Sodium Formate Recalibration – Automatically recalibrates mass spectral data using internal sodium formate reference peaks.

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EIC Generation, Integration & Export – Generates extracted ion chromatograms, integrates the peaks, and exports the results as a CSV file.

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UV Integration & Export – Automatically integrates predefined UV peaks, and exports the results as a CSV file.

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EIC (x,y) Export – Automatically exports all extracted ion chromatograms in a datafile as .xy files so they can be reconstructed in other software.

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Export as XML – Exports Bruker based LCMS datafiles to an open .xml format for compatibility with open metabolomics workflows.

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Rename MALDI Plate Spectra – Automatically renames each spectra in a MALDI spot analysis to a any name given in a external file for the particular spot value, eg: A2.

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